Allen Cell Catalog
Quality control database of gene-edited hiPS cell lines available for purchase |
Standard operating procedures
Cell culture, differentiation and microscopy protocols for gene-edited hiPSCs |
Cell Feature Explorer (CFE)
Online tool composed of a plot & 3D viewer to visualize segmented and processed hiPSC images |
AGAVE
Volume viewer tool with path-trace rendering to display multi-channel images |
Simularium
Online visual analysis tool to share and interrogate biological simulations |
Web Volume Viewer (Vol-E)
Online 3D viewer to visualize your own volumetric data including ZARR format |
BioFile Finder (BFF)
Online tool for curating datasets through query methods & image viewing |
Timelapse Feature Explorer
Online tool to interactively visualize & analyze segmented time-series microscopy data |
Allen Cell & Structure Segmenter
napari plugin & open-source Python-based toolkit for 3D image segmentation |
Software & Code
Data & code developed at the institute for open-access & download |
Genomics
Genomics & transcriptomics data of parental & gene-edited hiPSCs for open-access & download |