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Written protocols

Protocols.io Articles
Cell Culture
Microscopy

Protocols published on Protocols.io

Picture
Illumination Power and illumination stability
Protocols.io, February 2022. Nathalie G, Steve B, Rodrigo RB, Fabio B, Laszlo B, Veronika B, Ulrike B, Manel B, Craig B, Mariana TC, Pina C, Richard C, Nasser DM, Sam D, Frank E, Orestis F, Andreas F, Manfred G, David G, Marcel K, Birgit H, Gabriel K, Alex JL, Jeffrey MLD, Pascal L, Miso M, Michael SN, Britta SD, Stanley S, Sathya S, Roland T, Tse-Luen W, Kees VDO, Chloë VOT, Roland N, Laurent G. 
Picture
Maintenance of Undifferentiated hiPSC Cultures and Differentiation to Cardiomyocytes on Glass Surfaces
Protocols.io, March 2021. Angelique N, Stephanie QD, Kaytlyn G, Melissa H, Caroline H, Ruwanthi NG.

Standard operating procedures for cells in the lab

SOP: Cardiomyocyte differentiation methods v1.2.pdf
File Size: 633 kb
File Type: pdf
Download File




SOP: Fluorescent dye solution for flat field correction v1.0.pdf
File Size: 273 kb
File Type: pdf
Download File


SOP: Cell line scaleup & banking v1.3.pdf
File Size: 635 kb
File Type: pdf
Download File


SOP: CellMask and NucBlue v1.0.pdf
File Size: 11249 kb
File Type: pdf
Download File


SOP: WTC culture v1.8.pdf
File Size: 736 kb
File Type: pdf
Download File

updated:
May 2024

SOP: RNP transfection v1.0.pdf
File Size: 2156 kb
File Type: pdf
Download File


SOP: Cell plating for imaging v1.0.pdf
File Size: 2750 kb
File Type: pdf
Download File


SOP: ddPCR CNV assay for screening clones v1.0.pdf
File Size: 2963 kb
File Type: pdf
Download File

Download file
SOP: Cardiomyocyte differentiation methods_v1.2.pdf
Download file
SOP: Microscopy pipeline workflow image acquisition v4.0.pdf
Download file
SOP: Sub-resolution and focal check beads solution for alignment and psf measurements v1.0.pdf
Download file
SOP: Fluorescent dye solution for flat field correction v1.0.pdf
Download file
SOP: CellMask and NucBlue v1.0.pdf
Download file
SOP: Cell line scaleup and banking v1.0.pdf
Download file
SOP: WTC culture v1.6.pdf (Updated January 2019)
Download file
SOP: RNP transfection v1.0.pdf
Download file
SOP: Cell plating for imaging v1.0.pdf
Download file
SOP: ddPCR CNV assay for screening clones v1.0.pdf
 

Standard operating procedures for microscopy

SOP: Sub-resolution and focal check beads solution for alignment and psf measurements v1.0.pdf
File Size: 142 kb
File Type: pdf
Download File


SOP: Microscopy pipeline workflow image acquisition v1.0.pdf
File Size: 1793 kb
File Type: pdf
Download File


SOP: Fluorescent dye solution for flat field correction v1.0.pdf
File Size: 273 kb
File Type: pdf
Download File


SOP: Automated 96-well plate matrigel coating.pdf
File Size: 258 kb
File Type: pdf
Download File


SOP: Automated 96-well plate seeding.pdf
File Size: 252 kb
File Type: pdf
Download File


SOP: Automated daily feeding & imaging of ipscs.pdf
File Size: 425 kb
File Type: pdf
Download File

Download file
SOP: Microscopy pipeline workflow image acquisition v1.0.pdf
Download file
SOP: Sub-resolution and focal check beads solution for alignment and psf measurements v1.0.pdf
Download file
SOP: Fluorescent dye solution for flat field correction v1.0.pdf
Download file
SOP: Automated 96-well plate matrigel coating.pdf
Download file
SOP: Automated 96-well plate seeding.pdf
Download file
SOP: Automated daily feeding & imaging of iPSCs.pdf

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  • About
      Institute
      1. Our science: CellScapes
      2. Past foundational projects
      3. News feed
      4. About us
      5. Careers
  • Allen Cell Collection
      Order cells & plasmids
      1. Cell Catalog
      2. Disease Collection Cell Catalog
      3. Cell Catalog quickview
      4. Cell video shorts
      Lab methods
      1. Video protocols
      2. Written protocols
      3. Our methodology
      4. Support forum
      About our hiPS cells
      1. hiPS Cell Structure Overview
      2. Visual Guide to Human Cells
      3. Cell structure observations
      4. Why endogenous tagging?
      5. Differentiation into cardiomyocytes
      6. Genomics
      7. Download cell data: images, genomics, features
  • Data & Digital Tools
      General
      1. Tools and resources overview
      2. Download cell data: images, genomics, features
      3. Code repositories & software
      Desktop tools
      1. Allen Cell & Structure Segmenter
      2. AGAVE 3D pathtrace image viewer
      Web tools
      1. BioFile Finder
      2. Cell Feature Explorer
      3. Integrated Mitotic Stem Cell
      4. └ Z-stack viewer
      5. └ 3D viewer
      Web tools (con't)
      1. Simularium viewer
      2. Timelapse Feature Explorer
      3. Visual Guide to Human Cells
      4. Vol-E (Web Volume Viewer)
      5. 3D Cell Viewer
  • Analysis & Modeling
      Allen Integrated Cell models
      1. Visual Guide to Human Cells
      2. Integrated Mitotic Stem Cell
      3. └ Z-stack viewer
      4. └ 3D viewer
      5. Allen Integrated Cell
      6. └ 3D Probabilistic Modeling
      7. └ Label-free Determination
      4D biology models
      1. Simularium viewer
      Methodologies
      1. Drug perturbation pilot study
      2. hiPS cells during mitosis
      3. Differentiation into cardiomyocytes
  • Publications
      Articles
      1. Publications
      2. Preprints
      Presentations
      1. Talks & posters
  • Education
      Educational resources
      1. All resources
      2. Teaching materials
      Online tools popular with teachers
      1. Visual Guide to Human Cells
      2. Integrated Mitotic Stem Cell
      3. 3D Cell Feature Explorer
      4. 3D Cell Viewer
      5. hiPS cell structure overview
  • Support
      Questions
      1. FAQs
      2. Forum
      Tutorials for digital tools
      1. Video tutorials
      2. Visual Guide tutorial
      3. AGAVE documentation
      Lab methods
      1. Video protocols
      2. Written protocols
      3. Our methodology
  • 🔍
      SEARCHBAR