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      3. Integrated Mitotic Stem Cell
      4. └ Z-stack viewer
      5. └ 3D viewer
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      8. 3D probabilistic model viewer
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      2. AGAVE 3D pathtrace image viewer
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      3. └ Z-stack viewer
      4. └ 3D viewer
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      7. 3D Probabilistic Modeling
      8. └ 3D viewer
      9. Visual Guide to Human Cells
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News Feed

For general news from the Allen Institute for Cell Science, visit alleninstitute.org

MiTOSSis VR learning game available for download

3/9/2021

 
MiTOSSis game
Pick up and throw 3D cells generated from real microscopy data. Sort them by the stages of cell division, mitosis, to test your biology knowledge!
Download on STEAM
Learn more

Don't miss the last two 2020 Scientist of Color Speaker Series seminars & mark your calendars for 2021

11/7/2020

 
Picture
Omar Quintero is an associate professor of biology at the University of Richmond who sits on a Project Advisory Council for the Allen Institute for Cell Science that is focused on developing cutting edged tools for education. In the period directly after the killing of George Floyd and the nationwide protests against systemic racism that followed, Quintero, considered how he might find a way to support the work and careers of Black scientists. He decided to develop a seminar, the 2020 Scientist of Color Speaker Series. (–paraphrased from the article below)

Read the full article on the University of Richmond website: 

Professor brings together scientists of color in speaker series

Upcoming speakers 2020–2021
Recorded seminars on YouTube

New cell line lets researchers use CRISPR to reversibly switch off genes

10/23/2020

 
​CRISPR interference technique enables study of basic cell biology and disease in human stem cells​
Picture
The CRISPR interference technique allows new explorations of human cells. Here, Allen Distinguished Investigator Martin Kampmann, Ph.D., and his colleagues used the method to reduce levels of a dementia-associated protein known as progranulin, shown in green on the left, in human neurons by dialing down the progranulin gene in the cells on the right. (Image adapted from Tian et al (2019) Neuron 104:239)
Read full article on alleninstitute.org

Cytiva licenses Allen Institute’s advanced machine learning technology to develop new cell imaging techniques

8/7/2020

 
Strategic license to advance the field of 3D and live cell imaging.
Picture
Figure 1. Images from our collection of cells can be used to generate models that produce integrated images of 3D subcellular structures—all from an input brightfield image of a field of cells. Cell segmentations can then be applied to the predictions to determine structure localization for individual cells.
​Cytiva and the Allen Institute have entered into a license agreement to integrate the Allen Institute’s machine learning technology with Cytiva’s microscopy and image analysis systems to advance the development of cell imaging innovations....
Read full story
Label-free tool

Article: WSU professors create virtual lab on cell development

4/24/2020

 
Washington State University News wrote a followup article to a webinar, Distance Learning for Cell Biology: A virtual laboratory for teaching mitosis, hosted on April 14th, 2020.

The article begins:
Hundreds of Biology 107 students have taken part in a virtual laboratory exercise developed by two WSU professors [Eric Sheldon and 
Erika Offerdahl] in collaboration with the Allen Institute for Cell Science....
Picture
Read full article from RJ Wolcott on WSU News

Distance Learning for Cell Biology. Webinar Today April 14

4/13/2020

 
Join us Tuesday, April 14, at 10am PT for this free webinar:
​Distance Learning for Cell Biology: A virtual laboratory for teaching Mitosis

As part of our mission to support open science, the Allen Institute shares all of the data we generate freely for anyone to use in research or teaching. This enables students to conduct online experiments for distance learning. In this webinar, you’ll learn how to run a ready-to-use, fully online virtual lab experiment with your students.
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Register by 10am PST April 14, 2020

Allen Cell Explorer Distributes Terabytes of Data on AWS to Empower Scientists WorldwideWith Quilt Data, an APN Advanced Technology Partner

9/29/2019

 
Amazon Web Services (AWS) interviewed research engineer at the Allen Institute for Cell Science, Jackson Brown about using a service called Quilt to provide efficient public access to the large datasets produced by the Allen Institute for Cell Science. 
Picture
Picture
Read full story on AWS.amazon.com

Allen Cell Structure Segmenter: A Machine learning toolkit that lets biologists navigate their way through a 3D cell

8/6/2019

 
​We present the Allen Cell Structure Segmenter, a python-based, open-source toolkit that combines classic 3D image segmentation with artificial intelligence to detect cellular structures.
Picture
​Read more about this new toolkit and how it can help biologists analyze their 3D images of cells and be more quantitative with their results.
Allen Cell Structure Segmenter page
Read the release article

Allen Institute for Cell Science Debuts First Comprehensive View of Human Cell Division

5/22/2019

 
Picture
The Allen Institute today released the Integrated Mitotic Stem Cell, a data-driven model and visualization tool that captures — for the first time — a holistic view of human cell division. By enabling a deeper understanding of how healthy human cells divide, a process known as mitosis, the model will further basic biology research as well as studies of cancer, a disease that often results from cell division gone awry.
Explore the Integrated Mitotic Stem Cell
Read the press release

New VR game lets you learn about cells by tossing them

2/19/2019

 
Picture
The app, now on display at Pacific Science Center, teaches users the stages of cell division through interactions with 3D models of human cells.
View article & video interview
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cellscience.alleninstitute.org
  • About
      Institute
      1. News feed
      2. What we do
      3. Publications
      4. Allen Institute | allenInstitute.org
      5. Careers
      Site
      1. Home page
      2. Site updates
      3. Archived content
  • Allen Cell Collection
      Order cells & plasmids
      1. Cell Catalog
      2. Cell Catalog quickview
      3. Cell Shorts (documentaries on labs using our cells)
      4. Support forum
      Lab methods
      1. Instructional videos for success in the lab
      2. Standard operating procedures (written methods)
      3. Illustrated overviews
      About our hiPS cells
      1. hiPS Cell Structure Overview
      2. Visual Guide to Human Cells
      3. Cell structure observations
      4. Why endogenous tagging?
      5. Differentiation into cardiomyocytes
      6. Genomics
      7. Download cell data (images, genomics, features)
  • Data & Digital Tools
      Online image analysis
      1. Cell Feature Explorer (plotting & 3D viewer)
      2. 3D cell viewer (pre2018)
      3. Deep cell zoom (216,016 cells)
      Online modeling viewers
      1. Visual Guide to Human Cells
      2. Simularium (4D visual analysis)
      3. Integrated Mitotic Stem Cell
      4. └ Z-stack viewer
      5. └ 3D viewer
      6. Allen Integrated Cell viewer
      7. Label-free examples viewer
      8. 3D probabilistic model viewer
      Desktop tools
      1. Allen Cell & Structure Segmenter
      2. AGAVE 3D pathtrace image viewer
      Data & code
      1. Download cell data (images, genomics, features)
      2. Code repositories & software
  • Analysis & Modeling
      Allen Integrated Cell models
      1. Overview
      2. Integrated Mitotic Stem Cell
      3. └ Z-stack viewer
      4. └ 3D viewer
      5. Label-free Determination
      6. └ 3D viewer
      7. 3D Probabilistic Modeling
      8. └ 3D viewer
      9. Visual Guide to Human Cells
      4D biology models
      1. Simularium (online 4D viewer)
      Methodologies
      1. Drug perturbation pilot study
      2. hiPS cells during mitosis
      3. Differentiation into cardiomyocytes
  • Publications
      Articles
      1. All journal publications
      2. Preprints (biorxiv, arxiv)
      Posters
      1. Select posters
  • Education
      Education resources
      1. All Resources
      2. Teaching materials
      Online tools popular with teachers
      1. Visual Guide to Human Cells
      2. Integrated Mitotic Stem Cell
      3. Cell Feature Explorer (interactive plotting & 3D viewer)
      4. 3D cell viewer (pre2018 data)
      5. hiPS cell structure overview
  • Support
      Questions
      1. FAQs
      2. Forum
      Tutorials for digital tools
      1. Digital tool tutorials with videos
      2. Visual Guide tutorial
      3. AGAVE user guide
      Lab methods
      1. Instructional videos for success in the lab
      2. Standard operating procedures (written methods)
      3. Illustrated overviews
  • 🔍
      SEARCHBAR